IL_8P09_062

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_062 not in the Motif Atlas

Geometric match to IL_7RQB_032

Geometric discrepancy: 0.3183

The information below is about IL_7RQB_032

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_80097.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8P09|1|2|G|1104
8P09|1|2|C|1105
8P09|1|2|G|1106
*
8P09|1|2|C|1119
8P09|1|2|C|1120

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein SA

Chain D

ribosomal protein eS1

Chain T

40S ribosomal protein eS17

Chain c

40S ribosomal protein S27