IL_8P09_063

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_063 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0887

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8P09|1|2|G|1164
8P09|1|2|G|1165
8P09|1|2|A|1166
8P09|1|2|G|1167
8P09|1|2|U|1168
8P09|1|2|A|1169
8P09|1|2|U|1170
8P09|1|2|G|1171
*
8P09|1|2|U|1182
8P09|1|2|G|1183
8P09|1|2|A|1184
8P09|1|2|A|1185
8P09|1|2|A|1186
8P09|1|2|C|1187

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

40S ribosomal protein S23

Chain l

60S ribosomal protein L41