IL_8P09_067

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_067 not in the Motif Atlas

Homologous match to IL_8C3A_450

Geometric discrepancy: 0.1304

The information below is about IL_8C3A_450

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8P09|1|2|C|1226
8P09|1|2|C|1227
8P09|1|2|U|1228
*
8P09|1|2|G|1521
8P09|1|2|C|1522
8P09|1|2|G|1523

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain R

40S ribosomal protein uS19

Chain S

40S ribosomal protein uS9

Chain U

40S ribosomal protein uS13

Chain V

40S ribosomal protein eS19

Chain W

40S ribosomal protein uS10