IL_8P09_073

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8P09|1|2|U|1322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_073 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1456

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8P09|1|2|G|1321
8P09|1|2|U|1322
8P09|1|2|G|1323
*
8P09|1|2|C|1498
8P09|1|2|C|1499

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein eS10

Chain e

40S ribosomal protein S29

Chain f

ribosomal protein eS31

Chain j

Eukaryotic translation initiation factor 4C