IL_8P09_077

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_077 not in the Motif Atlas

Homologous match to IL_8C3A_459

Geometric discrepancy: 0.1338

The information below is about IL_8C3A_459

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_63702.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

13

Unit IDs

8P09|1|2|U|1343
8P09|1|2|G|1344
8P09|1|2|G|1345
*
8P09|1|2|C|1376
8P09|1|2|G|1377
8P09|1|2|A|1378

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein SA

Chain E

40S ribosomal protein S2

Chain F

Ribosomal protein S3

Chain T

40S ribosomal protein eS17