IL_8P09_079
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 8P09|1|2|U|1393
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P09_079 not in the Motif Atlas
- Homologous match to IL_8C3A_461
- Geometric discrepancy: 0.5396
- The information below is about IL_8C3A_461
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13404.1
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8P09|1|2|C|1391
8P09|1|2|A|1392
8P09|1|2|U|1393
8P09|1|2|G|1394
8P09|1|2|C|1395
*
8P09|1|2|G|1443
8P09|1|2|A|1444
8P09|1|2|G|1445
8P09|1|2|G|1446
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain S
- 40S ribosomal protein uS9
- Chain T
- 40S ribosomal protein eS17
- Chain W
- 40S ribosomal protein uS10
- Chain g
- Ribosomal protein RACK1
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