IL_8P09_080

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

8P09|1|2|C|1399, 8P09|1|2|U|1400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_080 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1356

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8P09|1|2|A|1398
8P09|1|2|C|1399
8P09|1|2|U|1400
8P09|1|2|A|1401
*
8P09|1|2|U|1437
8P09|1|2|U|1438
8P09|1|2|C|1439
8P09|1|2|U|1440

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein uS9

Chain W

40S ribosomal protein uS10

Chain g

Ribosomal protein RACK1