IL_8P09_089
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 8P09|1|2|C|1696, 8P09|1|2|A|1829
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P09_089 not in the Motif Atlas
- Geometric match to IL_4V88_463
- Geometric discrepancy: 0.2113
- The information below is about IL_4V88_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8P09|1|2|C|1695
8P09|1|2|C|1696
8P09|1|2|G|1697
*
8P09|1|2|C|1827
8P09|1|2|A|1828
8P09|1|2|A|1829
8P09|1|2|G|1830
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain 3
- mRNA
- Chain b
- 40S ribosomal protein S26
- Chain j
- Eukaryotic translation initiation factor 4C
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