IL_8P09_091

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_091 not in the Motif Atlas

Homologous match to IL_8C3A_472

Geometric discrepancy: 0.1406

The information below is about IL_8C3A_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8P09|1|2|G|1701
8P09|1|2|U|1702
8P09|1|2|C|1703
*
8P09|1|2|G|1820
8P09|1|2|U|1821
8P09|1|2|C|1822

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

mRNA

Chain R

40S ribosomal protein uS19

Chain j

Eukaryotic translation initiation factor 4C

Chain l

60S ribosomal protein L41