IL_8P09_102

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

8P09|1|2|A|304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_102 not in the Motif Atlas

Homologous match to IL_8C3A_407

Geometric discrepancy: 0.188

The information below is about IL_8C3A_407

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

8P09|1|2|G|303
8P09|1|2|A|304
8P09|1|2|U|305
8P09|1|2|C|306
*
8P09|1|2|G|325
8P09|1|2|A|326
8P09|1|2|C|327

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain I

40S ribosomal protein S6