IL_8P16_125

3D structure

PDB id

8P16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

AAGA*UCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAGA,UCUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P16_125 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2753

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8P16|1|2|A|77
8P16|1|2|A|78
8P16|1|2|G|79
8P16|1|2|A|80
*
8P16|1|2|U|89
8P16|1|2|C|90
8P16|1|2|U|91
8P16|1|2|U|92

Current chains

Chain 2

16S rRNA

Nearby chains