IL_8P17_097

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P17_097 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.2957

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8P17|1|1|A|2459
8P17|1|1|U|2460
8P17|1|1|A|2461
*
8P17|1|1|U|2489
8P17|1|1|G|2490
8P17|1|1|U|2491
8P17|1|1|U|2492
8P17|1|1|U|2493

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 6

Peptide chain release factor RF2

Chain M

Large ribosomal subunit protein uL16