IL_8P17_131

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8P17|1|2|U|244, 8P17|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P17_131 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0975

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8P17|1|2|G|242
8P17|1|2|A|243
8P17|1|2|U|244
8P17|1|2|U|245
8P17|1|2|A|246
8P17|1|2|G|247
*
8P17|1|2|C|277
8P17|1|2|G|278
8P17|1|2|A|279
8P17|1|2|C|280
8P17|1|2|G|281
8P17|1|2|A|282
8P17|1|2|U|283
8P17|1|2|C|284

Current chains

Chain 2

16S RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain v

Small ribosomal subunit protein uS17