IL_8P17_140

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P17_140 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.0965

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8P17|1|2|G|450
8P17|1|2|A|451
8P17|1|2|A|452
8P17|1|2|G|453
8P17|1|2|G|454
8P17|1|2|G|455
*
8P17|1|2|C|477
8P17|1|2|A|478
8P17|1|2|U|479
8P17|1|2|U|480
8P17|1|2|G|481
8P17|1|2|A|482
8P17|1|2|C|483

Current chains

Chain 2

16S RNA

Nearby chains

Chain u

Small ribosomal subunit protein bS16