IL_8P17_155

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P17_155 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0891

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8P17|1|2|G|887
8P17|1|2|G|888
8P17|1|2|A|889
8P17|1|2|G|890
8P17|1|2|U|891
8P17|1|2|A|892
8P17|1|2|C|893
8P17|1|2|G|894
*
8P17|1|2|U|905
8P17|1|2|A|906
8P17|1|2|A|907
8P17|1|2|A|908
8P17|1|2|A|909
8P17|1|2|C|910

Current chains

Chain 2

16S RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12