IL_8P17_158

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8P17|1|2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P17_158 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1293

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8P17|1|2|G|933
8P17|1|2|C|934
8P17|1|2|A|935
*
8P17|1|2|U|1380
8P17|1|2|U|1381
8P17|1|2|C|1382
8P17|1|2|C|1383
8P17|1|2|C|1384

Current chains

Chain 2

16S RNA

Nearby chains

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA

Chain l

30S ribosomal protein S7

Chain n

Small ribosomal subunit protein uS9