IL_8P18_088

3D structure

PDB id

8P18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P18_088 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.53

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8P18|1|1|G|2110
8P18|1|1|U|2111
8P18|1|1|G|2112
8P18|1|1|U|2113
8P18|1|1|A|2114
8P18|1|1|G|2115
8P18|1|1|G|2116
8P18|1|1|A|2117
8P18|1|1|U|2118
8P18|1|1|A|2119
8P18|1|1|G|2120
8P18|1|1|G|2121
*
8P18|1|1|C|2177
8P18|1|1|C|2178
8P18|1|1|C|2179

Current chains

Chain 1

23S rRNA

Nearby chains