IL_8P18_130

3D structure

PDB id

8P18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8P18|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P18_130 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1055

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8P18|1|2|G|147
8P18|1|2|G|148
8P18|1|2|A|149
8P18|1|2|U|150
8P18|1|2|A|151
8P18|1|2|A|152
8P18|1|2|C|153
*
8P18|1|2|G|168
8P18|1|2|C|169
8P18|1|2|U|170
8P18|1|2|A|171
8P18|1|2|A|172
8P18|1|2|U|173
8P18|1|2|A|174
8P18|1|2|C|175

Current chains

Chain 2

16S rRNA

Nearby chains

Chain y

Small ribosomal subunit protein bS20