IL_8P18_187
3D structure
- PDB id
- 8P18 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E167K RF2 on E. coli 70S release complex with UGG (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P18_187 not in the Motif Atlas
- Geometric match to IL_5J7L_358
- Geometric discrepancy: 0.1213
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8P18|1|3|A|34
8P18|1|3|C|35
8P18|1|3|C|36
8P18|1|3|C|37
8P18|1|3|C|38
*
8P18|1|3|G|44
8P18|1|3|A|45
8P18|1|3|A|46
8P18|1|3|C|47
8P18|1|3|U|48
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain a
- Large ribosomal subunit protein bL31
Coloring options: