IL_8P2F_019

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8P2F|1|A|G|846, 8P2F|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2F_019 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0641

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8P2F|1|A|G|719
8P2F|1|A|A|720
8P2F|1|A|A|721
8P2F|1|A|A|722
8P2F|1|A|C|723
*
8P2F|1|A|G|844
8P2F|1|A|A|845
8P2F|1|A|G|846
8P2F|1|A|A|847
8P2F|1|A|U|848
8P2F|1|A|A|849
8P2F|1|A|G|850
8P2F|1|A|C|851

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15