IL_8P2F_082

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8P2F|1|A|A|2466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2F_082 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0582

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

8P2F|1|A|G|2097
8P2F|1|A|A|2098
*
8P2F|1|A|U|2465
8P2F|1|A|A|2466
8P2F|1|A|C|2467
8P2F|1|A|C|2468

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

Transfer RNA; tRNA

Chain G

50S ribosomal protein L2