IL_8P2F_086

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUUG*CUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2F_086 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.3473

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8P2F|1|A|C|2134
8P2F|1|A|U|2135
8P2F|1|A|U|2136
8P2F|1|A|G|2137
*
8P2F|1|A|C|2206
8P2F|1|A|U|2207
8P2F|1|A|A|2208
8P2F|1|A|G|2209

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA