IL_8P2F_103

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2F_103 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.0794

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8P2F|1|A|U|2679
8P2F|1|A|U|2680
8P2F|1|A|A|2681
8P2F|1|A|G|2682
8P2F|1|A|U|2683
8P2F|1|A|A|2684
8P2F|1|A|C|2685
*
8P2F|1|A|G|2690
8P2F|1|A|G|2691
8P2F|1|A|A|2692
8P2F|1|A|C|2693
8P2F|1|A|C|2694
8P2F|1|A|G|2695

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Elongation factor G

Chain K

50S ribosomal protein L6