IL_8P2F_185

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2F_185 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0449

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8P2F|1|A|G|1710
8P2F|1|A|G|1711
8P2F|1|A|A|1712
8P2F|1|A|A|1713
8P2F|1|A|C|1714
8P2F|1|A|U|1715
8P2F|1|A|C|1716
8P2F|1|A|G|1717
8P2F|1|A|G|1718
*
8P2F|1|A|C|2017
8P2F|1|A|U|2018
8P2F|1|A|G|2019
8P2F|1|A|U|2020
8P2F|1|A|C|2021

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain N

50S ribosomal protein L14