IL_8P2G_022

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2G_022 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0609

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8P2G|1|A|U|748
8P2G|1|A|G|749
8P2G|1|A|A|750
8P2G|1|A|A|751
8P2G|1|A|G|752
*
8P2G|1|A|U|769
8P2G|1|A|G|770
8P2G|1|A|G|771
8P2G|1|A|A|772
8P2G|1|A|G|773

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L2