IL_8P2G_043

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8P2G|1|A|A|1132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2G_043 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.1182

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8P2G|1|A|G|1131
8P2G|1|A|A|1132
8P2G|1|A|G|1133
8P2G|1|A|U|1134
8P2G|1|A|G|1135
*
8P2G|1|A|C|1144
8P2G|1|A|U|1145
8P2G|1|A|C|1146

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36