3D structure

PDB id
8P2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.02 Å

Loop

Sequence
GUUU*AC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P2G_049 not in the Motif Atlas
Homologous match to IL_7RQB_050
Geometric discrepancy: 0.0747
The information below is about IL_7RQB_050
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.2
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

8P2G|1|A|G|1347
8P2G|1|A|U|1348
8P2G|1|A|U|1349
8P2G|1|A|U|1350
*
8P2G|1|A|A|1647
8P2G|1|A|C|1648

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 7
50S ribosomal protein L34
Chain W
50S ribosomal protein L23

Coloring options:


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