IL_8P2G_129

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8P2G|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2G_129 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.114

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8P2G|1|a|G|147
8P2G|1|a|G|148
8P2G|1|a|A|149
8P2G|1|a|U|150
8P2G|1|a|A|151
8P2G|1|a|A|152
8P2G|1|a|C|153
*
8P2G|1|a|G|168
8P2G|1|a|C|169
8P2G|1|a|U|170
8P2G|1|a|A|171
8P2G|1|a|A|172
8P2G|1|a|U|173
8P2G|1|a|A|174
8P2G|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S20