IL_8P2G_165

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

8P2G|1|a|C|1210, 8P2G|1|a|A|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2G_165 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.078

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8P2G|1|a|G|1068
8P2G|1|a|G|1069
*
8P2G|1|a|U|1209
8P2G|1|a|C|1210
8P2G|1|a|A|1211
8P2G|1|a|U|1212
8P2G|1|a|C|1213

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S3

Chain k

Small ribosomal subunit protein uS10

Chain o

30S ribosomal protein S14 type Z