IL_8P2H_004

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

8P2H|1|A|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_004 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.1201

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8P2H|1|A|G|81
8P2H|1|A|G|82
8P2H|1|A|G|83
8P2H|1|A|A|84
8P2H|1|A|G|85
*
8P2H|1|A|C|97
8P2H|1|A|U|98
8P2H|1|A|U|99
8P2H|1|A|U|100
8P2H|1|A|G|101
8P2H|1|A|A|102
8P2H|1|A|U|103
8P2H|1|A|C|104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L29

Chain X

50S ribosomal protein L24