IL_8P2H_046

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8P2H|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_046 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0715

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

8P2H|1|A|C|1246
8P2H|1|A|G|1247
8P2H|1|A|U|1248
8P2H|1|A|U|1249
8P2H|1|A|G|1250
8P2H|1|A|A|1251
8P2H|1|A|A|1252
8P2H|1|A|G|1253
*
8P2H|1|A|U|1272
8P2H|1|A|G|1273
8P2H|1|A|G|1274
8P2H|1|A|A|1275
8P2H|1|A|G|1276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L20