IL_8P2H_062

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_062 not in the Motif Atlas

Homologous match to IL_4WF9_062

Geometric discrepancy: 0.0602

The information below is about IL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8P2H|1|A|G|1695
8P2H|1|A|C|1696
8P2H|1|A|G|1697
8P2H|1|A|A|1698
8P2H|1|A|A|1699
8P2H|1|A|C|1700
*
8P2H|1|A|G|2031
8P2H|1|A|A|2032
8P2H|1|A|C|2033

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17