IL_8P2H_156

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8P2H|1|a|C|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_156 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1206

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8P2H|1|a|G|942
8P2H|1|a|C|943
8P2H|1|a|A|944
*
8P2H|1|a|U|1390
8P2H|1|a|U|1391
8P2H|1|a|C|1392
8P2H|1|a|C|1393
8P2H|1|a|C|1394

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain h

30S ribosomal protein S7

Chain j

30S ribosomal protein S9