IL_8P2H_158

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_158 not in the Motif Atlas

Homologous match to IL_5J7L_043

Geometric discrepancy: 0.159

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8P2H|1|a|G|1002
8P2H|1|a|A|1003
8P2H|1|a|C|1004
8P2H|1|a|A|1005
8P2H|1|a|U|1006
*
8P2H|1|a|A|1055
8P2H|1|a|C|1056

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S14 type Z