IL_8P2H_167

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

8P2H|1|a|U|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_167 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2108

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8P2H|1|a|G|1135
8P2H|1|a|U|1136
8P2H|1|a|U|1137
8P2H|1|a|G|1138
*
8P2H|1|a|C|1155
8P2H|1|a|A|1156
8P2H|1|a|C|1157
8P2H|1|a|U|1158
8P2H|1|a|C|1159

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain j

30S ribosomal protein S9

Chain k

Small ribosomal subunit protein uS10