3D structure

PDB id
8P2H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.49 Å

Loop

Sequence
UACAAAG*CAUAAAG
Length
14 nucleotides
Bulged bases
8P2H|1|a|U|1296
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P2H_170 not in the Motif Atlas
Homologous match to IL_5J7L_054
Geometric discrepancy: 0.1403
The information below is about IL_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

8P2H|1|a|U|1257
8P2H|1|a|A|1258
8P2H|1|a|C|1259
8P2H|1|a|A|1260
8P2H|1|a|A|1261
8P2H|1|a|A|1262
8P2H|1|a|G|1263
*
8P2H|1|a|C|1294
8P2H|1|a|A|1295
8P2H|1|a|U|1296
8P2H|1|a|A|1297
8P2H|1|a|A|1298
8P2H|1|a|A|1299
8P2H|1|a|G|1300

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain h
30S ribosomal protein S7
Chain j
30S ribosomal protein S9
Chain k
Small ribosomal subunit protein uS10
Chain o
30S ribosomal protein S14 type Z

Coloring options:


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