IL_8P2H_186

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2H_186 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0496

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8P2H|1|A|G|1710
8P2H|1|A|G|1711
8P2H|1|A|A|1712
8P2H|1|A|A|1713
8P2H|1|A|C|1714
8P2H|1|A|U|1715
8P2H|1|A|C|1716
8P2H|1|A|G|1717
8P2H|1|A|G|1718
*
8P2H|1|A|C|2017
8P2H|1|A|U|2018
8P2H|1|A|G|2019
8P2H|1|A|U|2020
8P2H|1|A|C|2021

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain N

50S ribosomal protein L14