IL_8P2K_030

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_030 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.2405

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8P2K|1|A2|U|567
8P2K|1|A2|C|568
8P2K|1|A2|C|569
8P2K|1|A2|A|570
*
8P2K|1|A2|U|582
8P2K|1|A2|U|583
8P2K|1|A2|A|584
8P2K|1|A2|A|585

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ai

40S ribosomal protein S9

Chain Ax

40S ribosomal protein S24