IL_8P2K_031

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

8P2K|1|A2|G|601

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_031 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.0876

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

8P2K|1|A2|A|600
8P2K|1|A2|G|601
8P2K|1|A2|OMG|602
8P2K|1|A2|G|603
8P2K|1|A2|C|604
8P2K|1|A2|A|605
8P2K|1|A2|A|606
8P2K|1|A2|G|607
*
8P2K|1|A2|C|637
8P2K|1|A2|U|638

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ab

40S ribosomal protein S2

Chain Ai

40S ribosomal protein S9