IL_8P2K_055

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8P2K|1|A2|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_055 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.0947

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8P2K|1|A2|G|953
8P2K|1|A2|C|954
8P2K|1|A2|U|955
8P2K|1|A2|A|956
8P2K|1|A2|G|957
*
8P2K|1|A2|C|968
8P2K|1|A2|U|969
8P2K|1|A2|U|970
8P2K|1|A2|G|971
8P2K|1|A2|G|972
8P2K|1|A2|A|973
8P2K|1|A2|C|974
8P2K|1|A2|C|975

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain An

40S ribosomal protein S14

Chain B5

Large subunit ribosomal RNA; LSU rRNA