IL_8P2K_090
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8P2K|1|A2|A|1826
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P2K_090 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.3442
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8P2K|1|A2|C|1709
8P2K|1|A2|G|1710
8P2K|1|A2|C|1711
8P2K|1|A2|U|1712
*
8P2K|1|A2|A|1823
8P2K|1|A2|A|1824
8P2K|1|A2|A|1825
8P2K|1|A2|A|1826
8P2K|1|A2|G|1827
Current chains
- Chain A2
- 18s rRNA
Nearby chains
- Chain AD
- 40S ribosomal protein S30
- Chain Aw
- 40S ribosomal protein S23
- Chain Az
- 60S ribosomal protein L41
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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