IL_8P2K_093

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

8P2K|1|A2|U|1722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_093 not in the Motif Atlas

Homologous match to IL_8C3A_476

Geometric discrepancy: 0.1061

The information below is about IL_8C3A_476

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8P2K|1|A2|U|1721
8P2K|1|A2|U|1722
8P2K|1|A2|G|1723
*
8P2K|1|A2|U|1813
8P2K|1|A2|A|1814

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Aw

40S ribosomal protein S23

Chain Az

60S ribosomal protein L41

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BV

Ribosomal protein L23