IL_8P2K_128

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8P2K|1|B5|G|484, 8P2K|1|B5|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_128 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.3154

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8P2K|1|B5|G|483
8P2K|1|B5|G|484
8P2K|1|B5|U|485
8P2K|1|B5|C|486
*
8P2K|1|B5|G|665
8P2K|1|B5|C|666

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Br

60S ribosomal protein L28