IL_8P2K_138

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GAAUC

Length

8 nucleotides

Bulged bases

8P2K|1|B5|A|843, 8P2K|1|B5|A|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_138 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1793

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8P2K|1|B5|G|716
8P2K|1|B5|A|717
8P2K|1|B5|C|718
*
8P2K|1|B5|G|842
8P2K|1|B5|A|843
8P2K|1|B5|A|844
8P2K|1|B5|U|845
8P2K|1|B5|C|846

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30