IL_8P2K_166

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_166 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1455

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8P2K|1|B5|C|1506
8P2K|1|B5|G|1507
8P2K|1|B5|A|1508
8P2K|1|B5|A|1509
8P2K|1|B5|G|1510
*
8P2K|1|B5|U|1527
8P2K|1|B5|G|1528
8P2K|1|B5|G|1529
8P2K|1|B5|A|1530
8P2K|1|B5|G|1531

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L8

Chain BR

Ribosomal protein L19

Chain Bp

60S ribosomal protein L37a