IL_8P2K_188
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8P2K|1|B5|C|1874, 8P2K|1|B5|A|1980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P2K_188 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.174
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8P2K|1|B5|G|1872
8P2K|1|B5|A|1873
8P2K|1|B5|C|1874
8P2K|1|B5|C|1875
8P2K|1|B5|C|1876
8P2K|1|B5|C|1877
8P2K|1|B5|A|1878
8P2K|1|B5|G|1879
8P2K|1|B5|A|1880
8P2K|1|B5|A|1881
8P2K|1|B5|A|1882
8P2K|1|B5|A|1883
*
8P2K|1|B5|U|1977
8P2K|1|B5|G|1978
8P2K|1|B5|A|1979
8P2K|1|B5|A|1980
8P2K|1|B5|A|1981
8P2K|1|B5|A|1982
8P2K|1|B5|U|1983
8P2K|1|B5|G|1984
8P2K|1|B5|G|1985
8P2K|1|B5|A|1986
8P2K|1|B5|U|1987
8P2K|1|B5|G|1988
8P2K|1|B5|G|1989
8P2K|1|B5|C|1990
8P2K|1|B5|G|1991
8P2K|1|B5|C|1992
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BB
- Ribosomal protein L3
- Chain BI
- 60S ribosomal protein L10
- Chain BO
- 60S ribosomal protein L13a
- Chain Bf
- 60S ribosomal protein L35a
- Chain Bm
- Ubiquitin-60S ribosomal protein L40
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