IL_8P2K_215

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8P2K|1|B5|G|3571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_215 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.1296

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8P2K|1|B5|A|2693
8P2K|1|B5|G|2694
8P2K|1|B5|U|2695
8P2K|1|B5|C|2696
8P2K|1|B5|G|2697
8P2K|1|B5|G|2698
*
8P2K|1|B5|C|3569
8P2K|1|B5|U|3570
8P2K|1|B5|G|3571
8P2K|1|B5|U|3572

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23