IL_8P2K_216

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8P2K|1|B5|U|2723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_216 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0812

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8P2K|1|B5|C|2710
8P2K|1|B5|G|2711
8P2K|1|B5|U|2712
8P2K|1|B5|A|2713
8P2K|1|B5|A|2714
8P2K|1|B5|C|2715
*
8P2K|1|B5|G|2720
8P2K|1|B5|G|2721
8P2K|1|B5|A|2722
8P2K|1|B5|U|2723
8P2K|1|B5|A|2724
8P2K|1|B5|A|2725
8P2K|1|B5|G|2726

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60S ribosomal protein L41

Chain Bp

60S ribosomal protein L37a