IL_8P2K_222

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8P2K|1|B5|A|3395, 8P2K|1|B5|U|3411, 8P2K|1|B5|C|3415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_222 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0798

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8P2K|1|B5|C|3392
8P2K|1|B5|G|3393
8P2K|1|B5|A|3394
8P2K|1|B5|A|3395
8P2K|1|B5|G|3396
8P2K|1|B5|G|3397
*
8P2K|1|B5|U|3409
8P2K|1|B5|G|3410
8P2K|1|B5|U|3411
8P2K|1|B5|U|3412
8P2K|1|B5|G|3413
8P2K|1|B5|A|3414
8P2K|1|B5|C|3415
8P2K|1|B5|G|3416

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

60S ribosomal protein L8

Chain Bp

60S ribosomal protein L37a