IL_8P2K_243

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAC*GUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_243 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2279

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8P2K|1|B5|A|3677
8P2K|1|B5|G|3678
8P2K|1|B5|A|3679
8P2K|1|B5|C|3680
*
8P2K|1|B5|G|3793
8P2K|1|B5|U|3794
8P2K|1|B5|U|3795
8P2K|1|B5|U|3796

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain Bi

60S ribosomal protein L36